Insert one of the following Wonder Mail codes to unlock the corresponding special mission:
| Effect | Code |
| Mount Avalanche 17F; Reward: Sun Ribbon + ? | 4C-NRH@R4+J6+@F0 7R&2MXFF739S8&##J |
| Mystifying Forest 7F, Explore with Mismagius; Reward: 550P, X-Ray Specs | C=5-=J31T=0&67Q5Q QCN4SRFQNYPH=FN1- |
| Drenched Bluff B3F (C); Reward: 200, Reviver Seed | R7&20 =M34M3M 6-=YN W@543 W--N%KT P&4PQ |
| Rotom Recruit | RJ-7% 9@63&0+ F50KN |
| Reward: Gabite Scale | =QTP+ NWTJCTK 9=53# |
| Treacherous Waters B10F; Challenge Suicune and recruit him | W+R@#J&JQTJ9@Q7S & 3YNQQR#@P95FN9&W7 |
| Lost Loot | WW@94 7Q9#6#& PWYXK |
| Reward: Golden Apple | =QTP+ 13TJHXK 9K53# |
| Mystery Jungle 21F, Arrest Lanturn; Reward: 700P, X-Ray Specs | Q+&6S@RC%S%H76T ## P&2NXS0&NY813NTQ1 |
| Reward: Space Globe | 0Y==K F32CNFX Y%&W% |
| Secret Slab | QY1&T F2@MY&Q 0R3XF |
| Reward: Golden Mask | F#46P YNNMXN+ 0T&X2 |
| Zero Isle South B74F; Reward: X-Ray Specs + ? | 4CH5+8255XQ#QJ3WY H0F0P@75PWMC&NK9T |
| Reward: Wonder Gummi | 5RPP% -7-1-+S %#W%# |
| Apple Woods 7F (A); Reward: Gold Ribbon, Big Apple | =42#H TF&QRM8 =0NJ+ R4MHW R-TN2#0 8C@2# |
| Southern Islands B13F; Challenge Raikou and recruit him | WS7994C2FTR2SN241 %@HKY#+#649JFY=7C |
| Apple Woods 8F (B); Reward: Recruit Combee [F] | =R-S0 R-5M-K% C&P6- K#503 S80&&H& RW4J6 |
| Blizzard Island 13F; Reward: Lunar Ribbon | CNJJN9-PSJNXX-NFH N2XT@XS2501K565KP |
| Reward: Mystery Part | 5Q4%6 1KP1X8C 0XKS6 |
| Beach Cave B2F (D); Reward: 150 + Black Gummi | w+S06 @PHR0PW 26X-6 #10-H Q%FPNW2 4Y1#0 |
| Reward: Golden Seed | 0SNJ8 5X+313T 2- |
| Sky Stairway 40F; Challenge Mewtwo and recruit him | CK9XSC-PQMSK4F48H 00XTN-=46719T&WK1 |
Successfully complete Chapter 10. Then, complete the indicated task to unlock the corresponding dungeon. After clearing a bonus dungeon, you can find a treasure chest on the last floor.
| Midnight Forest | Successfully complete the game, and find a job with ??? for the Place. |
| Mt. Mistral | Successfully complete the game, and make drinks at Spinda's Juice Bar. |
| Lost Wilderness | Successfully complete the game, and make drinks at Spinda's Juice Bar. |
| Sky Stairway | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| Lake Afar | Make 100 Recycles. |
| Mystery Jungle | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| Treacherous Waters | Get the 'Master 2 Star' rank. |
| Inferno Cave | Get the 'Guildmaster' rank. |
| Oblivion Forest | Get the 'Master 1 Star' rank. |
| Mt. Avalanche | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| Shimmer Desert | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| |
| Southern Islands | Get the 'Master 3 Star' rank. |
| Destiny Tower | Successfully complete the game, and make drinks at Spinda's Juice Bar. |
| World Abyss | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| Labyrinth Cave | Successfully complete the game, and find a job with ??? for the Place. |
| Shimmer Hill | Successfully complete the game, and find a job with ??? for the Place. |
| Happy Outlook | Successfully complete the game, and make drinks at Spinda's Juice Bar. |
| Tiny Meadow | Make 25 Recycles. |
| Giant Volcano | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| Landslide Cave | Make 3 Recycles. |
| Lush Prairie | Make drinks at Spinda's Juice Bar. |
| Serenity River | Make drinks at Spinda's Juice Bar. |
| Bottomless Sea | Get the 'Secret' rank, and obtain the job from Spinda's Cafe. |
| Oran Forest | Make 60 Recycles. |
| Star Cave | Successfully complete Special Episode 1 with the 'Secret' rank, then get Jirachi's Challenge Letter from Spinda's Cafe. |
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| Zero Island Center | Graduate from the Guild, and make 150 Recycles. |