- Mission List mode
Successfully complete Story mode on Difficulty 2 or higher to unlock Mission List mode for purchase for 20,000 Ryo at the shop.

- Prequel bonus
Have a saved game from Naruto: Clash Of Ninja Revolution 2 to get an extra 50,000 Ryo.

- Bonus characters
Successfully complete the indicated task to unlock the corresponding character for purchase. Notice: Anko, Asuma, Baki, Itachi Kisame, Jiraiya, Kankuro, Kurena, Temari, Tsunade, and Yugao are already available for purchase.

Chiyo, Choji, Deidara, Hinata, Hiruko, Kiba, Sasori, Shikamaru, and Shino	Successfully complete Story mode.
Bando	Have at least 700 to 800 battles, and purchase all other characters.
Kabuto, Orochimaru, Sai, Sasuke, and Yamato	Purchase all other characters except for Hidan and Kakuzu.
Hidan and Kakuzu	Successfully complete 30% of all Akatsuki member's missions.
Anbu Kakashi	Overcome Anbu Kakashi.
Kagura, Komachi, and Towa	Have a saved game from Naruto

- Bonus stages
Successfully complete Story mode on Difficulty 2 or higher to unlock the Akatsuki Hideout, Hidden Sand Village: Entrance, and Third Training Field stages for purchase for 3,000 Ryo each at the shop.


Purchase all other stages to unlock the Intersection, Shirato Road, and Warehouse Road stages for purchase for 4,000 Ryo each at the shop.


Purchase the Intersection, Shirato Road, and Warehouse Road stages to unlock the Silent Shrine stage for purchase for 5,000 Ryo at the shop.

- Fight against Anbu Kakashi
Successfully complete 40% of Kakashi's missions, including the 'S' rank mission against Guy, and complete at least 20% of every other character's missions. Then, replay Kakashi's 'S' rank mission, and his rival will now be Anbu Kakashi instead of Gai.