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Customizing appearance
You can customize your character's appearance again by going to the bathroom.
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Bonus weapons
Successfully complete the indicated task to unlock the corresponding special weapon:
| Brayko's SMGs | Kill Brayko. |
| Marburg's pistol | Bait Marburg into fighting to the death in the museum. |
| Gold SMG | Assassinate Brajka. |
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| Gold assault rifle | Sneak up on Al Samad Lieutenant without any alarms being sounded. |
| Brayko's stereo | Spare Brayko. |
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| Omen's shotgun | Kill Omen Deng. |
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Veteran class
Successfully complete the game under the Recruit class to unlock the Veteran class, which begins with three skill points in every category and 'Veteran' dialog options.
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Easy ammunition in 'Intercept Nasri The Arms Dealer' mission
Successfully complete the 'Overcome Nasri's Guards' objective, and remain in that room. There are three sets of stairs, with a door behind two of them and another with a table across the top. In front of that table is an random ammunition collectable. This collectable will respawn after approximately thirty seconds.
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Romance bonuses
Successfully complete the indicated task to unlock the corresponding bonus:
| Exclusive Interview (+5 Endurance, +500 XP) | Romance Scarlet. |
| Savage Love (-5% Fury, Roomsweep, Iron Will, and hard to kill cooldown) | Get 'assaulted' by selecting SIE as handler in the final mission while having a reputation higher than 7. |
| No Time For love (+20 Endurance, 20% Endurance Recharge) | Have no romances. |
| Rome-ance (+5 Endurance, +500 XP) | Romance Madison. |
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| Office Romance (+5 Endurance, +500 XP) | Romance Mina. |
| Ladies Man (+5 AP) | Successfully complete all four romances. |
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| Thanks But No Thanks (-5% cooldown on Evasion and Iron Will) | Refuse SIE's advances. |
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Refilling endurance meter
When you have taken endurance damage, go to the inventory screen, and select 'Armor'. Re-equip your armor (highlight armor and press A) to completely refill your endurance meter. Repeat this as many times as desired. -From: Ezra Rainstein
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Easy Boss kills
Get the pistol up to the advanced chain shot level. When a Boss sticks their head out, do a five shot chain shot to kill it instantly.
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Easy ammunition in 'Investigate Marburg's Villa' mission
At the end of the mission, you can find two ammo collectibles in the garden on the north and south sides. They will respawn after you move back to the doors.
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Achievements
Do the following things to obtain the corresponding Gamerscore points:
| 5 Points |
| SMG Havoc | Achieve the maximum SMG Critical Hit Multiplier 7 times in your career. | | | Assault Rifle Marksmanship | Realize 100 head shots with the Assault Rifle. | | | Ready For Anything | Acquire the vast majority of Intel available in the game. | | | Circuit Breaker | Bypass 20 electronic devices. | | | Technophile | Finish 5 missions wherein 6 different gadgets are used. | | | One With The Shadows | Finish 3 missions with less than 5 kills and with no enemies alerted to your presence. | | | Lurker | Evade or Takedown 75 enemies across your career. | | | Breaking and Entering | Pick 10 locks. | | | Pistol Mastery | Realize 100 Critical Hits with the Pistol. | | | Building a Deadlier Mousetrap | Have 100 placed devices detonate. | | | Shotgun Crowd Control | Realize 100 Critical Hits with the Shotgun. | | | Black Belt | Overcome 50 enemies with CQC. | | | Data Theft | Hack 10 computers. | | | 10 Points | | Evolution of an Action Hero | Finish the Alpha Protocol using the Recruit background. | | | Hard to Read | Use each stance at least 25% across 90 dialogue stance choices. | | | Ladies' Man | Romance all the ladies in Alpha Protocol in a single career. | | | Thorton, Inc. | Turn all your enemies into allies in one single career. | | | 15 Points | | Ask Questions First, Shoot Later | Refrain from killing in cold blood. | | | Judge, Jury, and Executioner | Let your gun do the talking. | | | 20 Points | | No Time For Love | Finish the game without being seduced. | | | 25 Points | | Desert Spear | Assassinate Sheikh Shaheed. | | | Hardcore | Finish Alpha Protocol on Hard difficulty setting. | | | 50 Points | | Basic Training | Finish the Training Mission. | | | 75 Points | | Operation Blood Feud | Finish Operation Blood Feud. | | | Alpha Protocol | Finish Operation Desert Spear. | | | Operation Deus Vult | Finish Operation Deus Vult. | | | Operation True Heirs | Finish Operation True Heirs. | | | 125 Points | | Full O | Finish Alpha Protocol. | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| 5 Points |
| Office Romance | Your working relationship with Mina Tang turned into something more. | | | Respected Enemies | You gained Marburg's respect and bested him in battle. | | | Youth Trumps Experience | By carefully pushing his buttons, you provoked Marburg into fighting to the death. | | | A Plot Uncovered | You discovered the identity of Sung's assassin. | | | Exclusive Interview | You and Scarlet Lake had a romantic trist. | | | Price For Lying | You killed Surkov for lying to you. | | | Never Trust A Sociopath | You successfully alienated 'secret agent' Steven Heck. | | | Savage Love | You gained the affection of SIE and allowed her to consummate her lust. | | | Russian Alliance | You forged a partnership with Sergei Surkov. | | | Rome-ance | You became more than friends with Madison Saint James. | | | 25 Points | | A Price On Mercy | You spared Konstantin Brayko. | | | Rising Star | You joined Halbech and put an end to Alpha Protocol. | | | Stay of Execution | You allowed Sheikh Shaheed to live. | | | Hard Choices | The Roman History Museum is safe, thanks to your efforts. | | | No Compromise, No Mercy | Choosing your own path, you put an end to Halbech and Alpha Protocol. | | | Secret Service | You prevented the assassination of President Ronald Sung. | | | Friends Before Strangers | You saved Madison Saint James from certain death. | | | Keeping the Peace | You prevented a riot from killing hundreds in Taipei. | | | Crime Buster | You reconciled with Alpha Protocol and put Halbech out of business. | | | One Less Gangster | Konstantin Brayko is dead by your hand. | | | | | | | | | | | | | | | | | | | | | |
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